Numerical Gaussian Processes for Time-dependent and Non-linear Partial Differential Equations

We introduce the concept of numerical Gaussian processes, which we define as Gaussian processes with covariance functions resulting from temporal discretization of time-dependent partial differential equations. Numerical Gaussian processes, by construction, are designed to deal with cases where: (1) all we observe are noisy data on black-box initial conditions, and (2) we are interested in quantifying the uncertainty associated with such noisy data in our solutions to time-dependent partial differential equations. Our method circumvents the need for spatial discretization of the differential operators by proper placement of Gaussian process priors. This is an attempt to construct structured and data-efficient learning machines, which are explicitly informed by the underlying physics that possibly generated the observed data. The effectiveness of the proposed approach is demonstrated through several benchmark problems involving linear and nonlinear time-dependent operators. In all examples, we are able to recover accurate approximations of the latent solutions, and consistently propagate uncertainty, even in cases involving very long time integration

Physics Informed Deep Learning (Part II): Data-driven Discovery of Nonlinear Partial Differential Equations

We introduce physics informed neural networks -- neural networks that are trained to solve supervised learning tasks while respecting any given law of physics described by general nonlinear partial differential equations. In this second part of our two-part treatise, we focus on the problem of data-driven discovery of partial differential equations. Depending on whether the available data is scattered in space-time or arranged in fixed temporal snapshots, we introduce two main classes of algorithms, namely continuous time and discrete time models. The effectiveness of our approach is demonstrated using a wide range of benchmark problems in mathematical physics, including conservation laws, incompressible fluid flow, and the propagation of nonlinear shallow-water waves

Physics Informed Deep Learning (Part I): Data-driven Solutions of Nonlinear Partial Differential Equations

We introduce physics informed neural networks -- neural networks that are trained to solve supervised learning tasks while respecting any given law of physics described by general nonlinear partial differential equations. In this two part treatise, we present our developments in the context of solving two main classes of problems: data-driven solution and data-driven discovery of partial differential equations. Depending on the nature and arrangement of the available data, we devise two distinct classes of algorithms, namely continuous time and discrete time models. The resulting neural networks form a new class of data-efficient universal function approximators that naturally encode any underlying physical laws as prior information. In this first part, we demonstrate how these networks can be used to infer solutions to partial differential equations, and obtain physics-informed surrogate models that are fully differentiable with respect to all input coordinates and free parameters

Inferring solutions of differential equations using noisy multi-fidelity data

For more than two centuries, solutions of differential equations have been obtained either analytically or numerically based on typically well-behaved forcing and boundary conditions for well-posed problems. We are changing this paradigm in a fundamental way by establishing an interface between probabilistic machine learning and differential equations. We develop data-driven algorithms for general linear equations using Gaussian process priors tailored to the corresponding integro-differential operators. The only observables are scarce noisy multi-fidelity data for the forcing and solution that are not required to reside on the domain boundary. The resulting predictive posterior distributions quantify uncertainty and naturally lead to adaptive solution refinement via active learning. This general framework circumvents the tyranny of numerical discretization as well as the consistency and stability issues of time-integration, and is scalable to high-dimensions.Comment: 19 pages, 3 figure

Machine Learning of Space-Fractional Differential Equations

Data-driven discovery of "hidden physics" -- i.e., machine learning of differential equation models underlying observed data -- has recently been approached by embedding the discovery problem into a Gaussian Process regression of spatial data, treating and discovering unknown equation parameters as hyperparameters of a modified "physics informed" Gaussian Process kernel. This kernel includes the parametrized differential operators applied to a prior covariance kernel. We extend this framework to linear space-fractional differential equations. The methodology is compatible with a wide variety of fractional operators in $\mathbb{R}^d$ and stationary covariance kernels, including the Matern class, and can optimize the Matern parameter during training. We provide a user-friendly and feasible way to perform fractional derivatives of kernels, via a unified set of d-dimensional Fourier integral formulas amenable to generalized Gauss-Laguerre quadrature. The implementation of fractional derivatives has several benefits. First, it allows for discovering fractional-order PDEs for systems characterized by heavy tails or anomalous diffusion, bypassing the analytical difficulty of fractional calculus. Data sets exhibiting such features are of increasing prevalence in physical and financial domains. Second, a single fractional-order archetype allows for a derivative of arbitrary order to be learned, with the order itself being a parameter in the regression. This is advantageous even when used for discovering integer-order equations; the user is not required to assume a "dictionary" of derivatives of various orders, and directly controls the parsimony of the models being discovered. We illustrate on several examples, including fractional-order interpolation of advection-diffusion and modeling relative stock performance in the S&P 500 with alpha-stable motion via a fractional diffusion equation.Comment: 26 pages, 10 figures. In v2, a minor change to the formatting of a handful of references was made in the bibliography; the main text was unchanged. In v3, minor improvements were made to the exposition; more details about motivation, examples, optimization, and relation to previous works were give

Conditional deep surrogate models for stochastic, high-dimensional, and multi-fidelity systems

We present a probabilistic deep learning methodology that enables the construction of predictive data-driven surrogates for stochastic systems. Leveraging recent advances in variational inference with implicit distributions, we put forth a statistical inference framework that enables the end-to-end training of surrogate models on paired input-output observations that may be stochastic in nature, originate from different information sources of variable fidelity, or be corrupted by complex noise processes. The resulting surrogates can accommodate high-dimensional inputs and outputs and are able to return predictions with quantified uncertainty. The effectiveness our approach is demonstrated through a series of canonical studies, including the regression of noisy data, multi-fidelity modeling of stochastic processes, and uncertainty propagation in high-dimensional dynamical systems.Comment: 37 pages, 11 figures, Submitted to Computational Mechanic

Deep learning of free boundary and Stefan problems

Free boundary problems appear naturally in numerous areas of mathematics, science and engineering. These problems present a great computational challenge because they necessitate numerical methods that can yield an accurate approximation of free boundaries and complex dynamic interfaces. In this work, we propose a multi-network model based on physics-informed neural networks to tackle a general class of forward and inverse free boundary problems called Stefan problems. Specifically, we approximate the unknown solution as well as any moving boundaries by two deep neural networks. Besides, we formulate a new type of inverse Stefan problems that aim to reconstruct the solution and free boundaries directly from sparse and noisy measurements. We demonstrate the effectiveness of our approach in a series of benchmarks spanning different types of Stefan problems, and illustrate how the proposed framework can accurately recover solutions of partial differential equations with moving boundaries and dynamic interfaces. All code and data accompanying this manuscript are publicly available at \url{https://github.com/PredictiveIntelligenceLab/DeepStefan}.Comment: 27 pages, 16 figures, 12 table

Physics-Constrained Deep Learning for High-dimensional Surrogate Modeling and Uncertainty Quantification without Labeled Data

Surrogate modeling and uncertainty quantification tasks for PDE systems are most often considered as supervised learning problems where input and output data pairs are used for training. The construction of such emulators is by definition a small data problem which poses challenges to deep learning approaches that have been developed to operate in the big data regime. Even in cases where such models have been shown to have good predictive capability in high dimensions, they fail to address constraints in the data implied by the PDE model. This paper provides a methodology that incorporates the governing equations of the physical model in the loss/likelihood functions. The resulting physics-constrained, deep learning models are trained without any labeled data (e.g. employing only input data) and provide comparable predictive responses with data-driven models while obeying the constraints of the problem at hand. This work employs a convolutional encoder-decoder neural network approach as well as a conditional flow-based generative model for the solution of PDEs, surrogate model construction, and uncertainty quantification tasks. The methodology is posed as a minimization problem of the reverse Kullback-Leibler (KL) divergence between the model predictive density and the reference conditional density, where the later is defined as the Boltzmann-Gibbs distribution at a given inverse temperature with the underlying potential relating to the PDE system of interest. The generalization capability of these models to out-of-distribution input is considered. Quantification and interpretation of the predictive uncertainty is provided for a number of problems.Comment: 51 pages, 18 figures, submitted to Journal of Computational Physic

Multi-fidelity classification using Gaussian processes: accelerating the prediction of large-scale computational models

Machine learning techniques typically rely on large datasets to create accurate classifiers. However, there are situations when data is scarce and expensive to acquire. This is the case of studies that rely on state-of-the-art computational models which typically take days to run, thus hindering the potential of machine learning tools. In this work, we present a novel classifier that takes advantage of lower fidelity models and inexpensive approximations to predict the binary output of expensive computer simulations. We postulate an autoregressive model between the different levels of fidelity with Gaussian process priors. We adopt a fully Bayesian treatment for the hyper-parameters and use Markov Chain Mont Carlo samplers. We take advantage of the probabilistic nature of the classifier to implement active learning strategies. We also introduce a sparse approximation to enhance the ability of themulti-fidelity classifier to handle large datasets. We test these multi-fidelity classifiers against their single-fidelity counterpart with synthetic data, showing a median computational cost reduction of 23% for a target accuracy of 90%. In an application to cardiac electrophysiology, the multi-fidelity classifier achieves an F1 score, the harmonic mean of precision and recall, of 99.6% compared to 74.1% of a single-fidelity classifier when both are trained with 50 samples. In general, our results show that the multi-fidelity classifiers outperform their single-fidelity counterpart in terms of accuracy in all cases. We envision that this new tool will enable researchers to study classification problems that would otherwise be prohibitively expensive. Source code is available at https://github.com/fsahli/MFclass

Gaussian processes meet NeuralODEs: A Bayesian framework for learning the dynamics of partially observed systems from scarce and noisy data

This paper presents a machine learning framework (GP-NODE) for Bayesian systems identification from partial, noisy and irregular observations of nonlinear dynamical systems. The proposed method takes advantage of recent developments in differentiable programming to propagate gradient information through ordinary differential equation solvers and perform Bayesian inference with respect to unknown model parameters using Hamiltonian Monte Carlo sampling and Gaussian Process priors over the observed system states. This allows us to exploit temporal correlations in the observed data, and efficiently infer posterior distributions over plausible models with quantified uncertainty. Moreover, the use of sparsity-promoting priors such as the Finnish Horseshoe for free model parameters enables the discovery of interpretable and parsimonious representations for the underlying latent dynamics. A series of numerical studies is presented to demonstrate the effectiveness of the proposed GP-NODE method including predator-prey systems, systems biology, and a 50-dimensional human motion dynamical system. Taken together, our findings put forth a novel, flexible and robust workflow for data-driven model discovery under uncertainty. All code and data accompanying this manuscript are available online at \url{https://github.com/PredictiveIntelligenceLab/GP-NODEs}.Comment: 27 pages, 16 figures, 4 tables. arXiv admin note: text overlap with arXiv:2004.0684